Index

A

add_common_args() (in module excavate.main) add_generate_parser() (in module excavate.main)

add_pair_parser() (in module excavate.main) all_guides_var_info() (in module excavate.ap) apply_pairing() (in module excavate.main)

C

Cas (class in excavate.ap) cas_obj (in module excavate.ap) count_exact_matches() (in module excavate.ap)

create_custom_cas_obj() (in module excavate.ap) create_exclusion_pos_set() (in module excavate.ap) create_gens() (in module excavate.ap) create_regex_pam() (in module excavate.ap)

E

excavate.ap module

excavate.main module

F

find_guides() (in module excavate.ap)

fixed_point_pair() (in module excavate.ap)

G

getaltseq() (in module excavate.ap)

I

init_worker() (in module excavate.ap)

initialize_cas_obj() (in module excavate.main)

L

load_variant_data() (in module excavate.main)

M

main() (in module excavate.main) makeseq() (in module excavate.ap)

module excavate.ap excavate.main

O

one_mismatch() (in module excavate.ap)

output_bed_format() (in module excavate.ap)

R

random_pair() (in module excavate.ap) run_generate() (in module excavate.main)

run_off_targets() (in module excavate.main) run_pairing() (in module excavate.main)

S

SaCas9 (in module excavate.ap)

search_pattern() (in module excavate.ap) split_phased() (in module excavate.ap)

T

targetable_vars() (in module excavate.ap)

tiling_pair() (in module excavate.ap)