EXCAVATE-HT Documentation
=========================

EXCAVATE-HT (EXtraction of Common Allelic VAriants for Targeted Editing in High-Throughput)
is a Python-based bioinformatic pipeline to mine population and personalised variant data to identify genomic 
loci targetable for CRISPR-based allele-specific editing and create single and dual-gRNA libraries to enable 
high-throughput screens of these edits.

.. toctree::
   :maxdepth: 2
   :caption: Contents

   how_it_works
   installation
   parameters
   examples
   api_reference
   contributing

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`